API

API

Browse API reference

Cli

Installation

Install nf-core/tools
TUI

Explore commands graphically

Pipelines

create

Scaffold new pipelines
list

List pipelines
launch

Launch pipelines via TUI or GUI
create params file

Create parameter files
download

Download pipelines and dependencies
licences

Print software licenses
rocrate

Create RO-Crates
lint

Lint pipelines
schema

Build schema files
bump version

Bump pipeline versions
sync

Sync pipelines with template
create logo

Create pipeline logos

Modules

list

List modules
info

View module information
install

Install modules
update

Update modules
remove

Remove modules
patch

Create module patches
create

Create modules
lint

Lint modules
test

Create module tests
bump versions

Bump module versions

Subworkflows

list

List subworkflows
info

View subworkflow information
install

Install subworkflows
update

Update subworkflows
remove

Remove subworkflows
create

Create subworkflows
lint

Lint subworkflows
test

Create subworkflow tests

Test datasets

list

List test dataset files
list branches

List test dataset branches
search

Search test dataset files